Table 2 Repositories for collecting open data for student’s biomedical projects
From: FAIR data management: a framework for fostering data literacy in biomedical sciences education
Website description | URL | Metadata availability | Type of data | Reference |
|---|---|---|---|---|
PubMed/Medline | pubmed.ncbi.nlm.nih.gov | Not available | Biomedical literature | [26] |
EudraVigilance | ema.europa.eu | Not available | Drug safety information in the European Union | [27] |
SpainUDP | spainudp.isciii.es | Not available | Data about rare diseases studies in Spain | [28] |
FEDRA | notificaRAM.es | Not available | Pharmacovigilance notifications data in Spain | [29] |
The Genotype-Tissue Expression (GTEx) project | gtexportal.org | Yes | Gene expression and regulation data in various tissues | [30] |
GEO and ArrayExpress | ncbi.nlm.nih.gov/geo | Yes | Gene expression and microarray experiment data | [31] |
TCGABiolinks NCI Genomic Data Commons | bioconductor.org | Yes | Tool for accessing TCGA data through R | [32] |